Collecting and analysing public gene expression datasets and forming the study group

Results: collection of public gene expression datasets for diverse carcinomas and type 2 diabetes, report, feasibility study, processed biological samples, evaluation report for the collected samples

Deadline: month 4

Testing and evaluating the main gene expression analysis algorithms and the analysis of resection samples

Results: software for testing algorithms, algorithm evaluation report, anamnetic files, research report

Deadline: month 10

Developing new bioinformatics algorithms for gene expression data and detecting the phenotypic expression of key genes

Results: algorithm implementation, algorithm evaluation report, immunofluorescence analysis report, research report, experimental model

Deadline: month 16

Detailed analysis of a public colon cancer dataset and its correlation with AI/LOH MSI experimental data

Results: algorithm implementation, research report, publications

Deadline: month 22

Allelic imbalance alalysis (AI/LOH, MSI) in colorectal cancer

Results: AI/LOH reports for the analysed resection samples

Deadline: month 26

Validating the algorithms on a second dataset and correlating the gene expression data with the AI/LOH MSI experimental data

Results: algorithm implementation, research report, publications

Deadline: month 28

Consolidating the results and planning new lab experiments

Results: prototype, final report, publications, laboratory procedures

Deadline: month 36